Matlab: technical computing package used for applied mathematics as well as sciences that might require such mathematical modeling functionality.  Through addons it can be made to be a more general purpose statistical package.

Lisrel: a program for structural equation modeling

     SSI has a tremendous amount of Lisrel resources online here

StatTransfer: coupled with Stata, allows for easy switching of data from one type of statistical data file to another

Eviews: statistical package with an econometrics focus, particularly time-series analysis

Nvivo: qualitative data analysis

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